Cannabis Root Rot in DWC Systems: Causes, Symptoms, and Proven Solutions
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Growing cannabis using the Deep Water Culture (DWC) method offers rapid growth and high yields, as the roots are constantly submerged in oxygen rich nutrient water. However, one of the most common and destructive problems DWC growers face is root rot.
Root rot slows down plant growth, causes yellowing and drooping leaves, and in severe cases, can lead to the complete death of the plant.
In this article, we’ll explain what root rot is, what causes it, and how to prevent it including practical steps for RootBox Hydro systems.

What Is Root Rot?
Root rot is typically caused by a fungal like pathogen called Pythium, which thrives in warm, low oxygen environments.
Poor oxygenation, high water temperature, or unclean equipment can accelerate its spread.
Healthy roots are white or light beige and smell fresh.
If the roots turn brown, slimy, and foul smelling, it’s an early warning sign of root rot.
Common Causes of Root Rot
1. Low Dissolved Oxygen Levels
In DWC systems, insufficient oxygen allows harmful pathogens to multiply.
Weak air pumps, blocked diffusers, or a lack of airflow are common culprits.
2. High Water Temperature
When the reservoir temperature exceeds 24°C (75°F), the oxygen level in the water drops sharply.
This suffocates the roots and encourages harmful microorganisms to grow rapidly.
3. Dirty Equipment and Biofilm
If the reservoir, hoses, or air stones are not cleaned regularly, a biofilm forms providing the perfect environment for bacteria and Pythium spores.
4. Imbalanced pH and EC Levels
Unstable pH or overly high EC can damage root surfaces, making them more vulnerable to infections.
Symptoms of Root Rot
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Roots turning brown or dark tan
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Slimy texture and foul odor
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Reduced water and nutrient uptake
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Yellowing or drooping leaves
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Stunted or halted plant growth
Catching it early makes recovery possible, but prolonged infection can destroy the entire root mass.
How to Prevent Root Rot in DWC Systems
1. Maintain Proper Water Temperature
Keep your DWC reservoir between 18–22°C (64–72°F).
This range maintains high oxygen levels and prevents pathogens from spreading.
If needed, use a water chiller or frozen water bottles during hot periods.
2. Provide Strong Oxygenation
Use a powerful air pump and large air stones to maximize oxygen circulation.
RootBox Hydro systems are designed with efficient air distribution that keeps roots constantly oxygenated.
3. Keep the Reservoir Clean
Clean the reservoir, hoses, and air stones at every water change.
Avoid chlorine based products use hydrogen peroxide (H₂O₂) or food-grade disinfectants instead.
4. Balance pH and EC Levels
Maintain a pH between 5.8 and 6.2, and an EC range of 1.0 to 2.2, depending on the growth stage.
RootBox Hydro’s Perfect pH Down & Up solutions help stabilize water chemistry safely and precisely.
5. Introduce Beneficial Microorganisms
Beneficial bacteria supplements strengthen root immunity by outcompeting harmful pathogens.
They are especially effective in warm climates and boost root resilience against rot.
What to Do If Root Rot Has Already Started
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Trim off the infected root parts with sterilized scissors.
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Empty and disinfect the reservoir thoroughly.
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Refill with fresh nutrient solution and adjust pH to 5.8–6.0.
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Increase oxygenation by adding extra air stones or boosting air pump output.
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Apply a natural root booster such as seaweed extract to encourage recovery.
With quick action, the plant’s root system can regenerate and continue to grow healthily.
Conclusion
Root rot is one of the most serious yet preventable problems in DWC cannabis cultivation.
By maintaining proper water temperature, strong oxygenation, system cleanliness, and balanced pH, you can eliminate nearly all risks.
RootBox Hydro systems are engineered to ensure maximum water circulation and oxygen balance, minimizing the chance of root rot while promoting powerful, healthy root growth.
With consistent maintenance and monitoring, growers can achieve one goal: strong roots, stronger plants.